It would be cool if on the bar chart the two bars for each agency could be combined; make the furloughed employees in blue and show the rest of the agency in grey-blue or something like that, so it more visually shows how the agencies are diminished.
If the author chooses to do this, absolutely get rid of the log scale. The chart makes it look like 95% of the DoD civilians are on furlough. Its 50%. The author is simply trying to show too much on that chart, and s/he is inadvertently making it look way worse to the average person (who doesn't know what a log scale is) than is intended.
I may lose my salary because of this shutdown (this thing affects way more than direct govt employees), so I am probably biased towards making this seem as bad as possible. But I can't stand charts that are misleading.