It seems like the current Vundle version does not play well with .vimrc under ve...

		zoul on Jan 13, 2012 \| parent \| context \| favorite \| on: Vim-powerline: The ultimate vim statusline utility It seems like the current Vundle version does not play well with .vimrc under version control. That’s why I like Pathogen more, since I can simply insert the bundles as Git submodules into .vim/bundle. (Submodule support for Vundle is already on the way, there are some pull requests on GitHub.)

Try put .vim/bundle into .gitignore